Nextflow workflow report

[spontaneous_liskov]

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_FETCHNGS:SRA:ASPERA_CLI (ERX1188904_ERR1109373)'

Caused by:
  Process `NFCORE_FETCHNGS:SRA:ASPERA_CLI (ERX1188904_ERR1109373)` terminated with an error exit status (1)


Command executed:

  ascp \
      -QT -l 300m -P33001 \
      -i $CONDA_PREFIX/etc/aspera/aspera_bypass_dsa.pem \
      era-fasp@fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz \
      ERX1188904_ERR1109373_1.fastq.gz
  
  echo "9fd57225d6c07a31843276d6df9b15c0  ERX1188904_ERR1109373_1.fastq.gz" > ERX1188904_ERR1109373_1.fastq.gz.md5
  md5sum -c ERX1188904_ERR1109373_1.fastq.gz.md5
  
  ascp \
      -QT -l 300m -P33001 \
      -i $CONDA_PREFIX/etc/aspera/aspera_bypass_dsa.pem \
      era-fasp@fasp.sra.ebi.ac.uk:/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz \
      ERX1188904_ERR1109373_2.fastq.gz
  
  echo "5a62e8f785687dce890cfb4fe3e607f9  ERX1188904_ERR1109373_2.fastq.gz" > ERX1188904_ERR1109373_2.fastq.gz.md5
  md5sum -c ERX1188904_ERR1109373_2.fastq.gz.md5
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_FETCHNGS:SRA:ASPERA_CLI":
      aspera_cli: $(ascli --version)
  END_VERSIONS

Command exit status:
  1

Command output:
  Completed: 3K bytes transferred in 0 seconds
   (47K bits/sec), in 1 file.
  ERX1188904_ERR1109373_1.fastq.gz: FAILED

Command error:
  Unable to find image 'quay.io/biocontainers/aspera-cli:4.14.0--hdfd78af_1' locally
  4.14.0--hdfd78af_1: Pulling from biocontainers/aspera-cli
  642efca944a0: Pulling fs layer
  bd9ddc54bea9: Pulling fs layer
  7b8e1e5ce0be: Pulling fs layer
  bd9ddc54bea9: Verifying Checksum
  bd9ddc54bea9: Download complete
  642efca944a0: Download complete
  642efca944a0: Pull complete
  bd9ddc54bea9: Pull complete
  7b8e1e5ce0be: Verifying Checksum
  7b8e1e5ce0be: Download complete
  7b8e1e5ce0be: Pull complete
  Digest: sha256:07678dfe3a66d095861841dd147739d0acdfe4b96fca339d68acb3050f12aac2
  Status: Downloaded newer image for quay.io/biocontainers/aspera-cli:4.14.0--hdfd78af_1
  Completed: 3K bytes transferred in 0 seconds
   (47K bits/sec), in 1 file.
  ERX1188904_ERR1109373_1.fastq.gz: FAILED
  md5sum: WARNING: 1 of 1 computed checksums did NOT match

Work dir:
  /workspace/fetchngs/work/c5/4f02c6059fffd4648f62745f74f42c

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Run times
06-Jun-2024 12:31:56 - 06-Jun-2024 12:32:59 (duration: 1m 3s)
  13 succeeded  
  0 cached  
  0 ignored  
  1 failed  
Nextflow command
nextflow run nf-core/fetchngs -profile docker --input ids.csv --outdir output --download_method aspera
CPU-Hours
0.1 (40.8% failed)
Launch directory
/workspace/fetchngs
Work directory
/workspace/fetchngs/work
Project directory
/home/gitpod/.nextflow/assets/nf-core/fetchngs
Script name
main.nf
Script ID
0f0b67958c4853dabf8556e682b6a379
Workflow session
1b9f6db5-b694-4ccb-b870-b3b1f8d63076
Workflow repository
https://github.com/nf-core/fetchngs, revision master (commit hash 8ec2d934f9301c818d961b1e4fdf7fc79610bdc5)
Workflow profile
docker
Nextflow version
version 24.04.2, build 5914 (29-05-2024 06:19 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)